Moved back to debian base image; moved docker support scripts; updated language server java entry to not be appimage aligned in arg format

Docker/Dockerfile

@@ -1,19 +1,34 @@
 # 1. A: Define a base image
-# FROM python:3.12
+# FROM scratch
+# FROM busybox
 # FROM alpine:3.22.1
-FROM alpine:latest
-# FROM debian:bookworm-slim
+# FROM alpine:latest
+# FROM python:3.12
+FROM debian:bookworm-slim
 
 # 1. B: Set ENV Variables
-ENV PYTHON_VERSION=3.12
-ENV JAVA_VERSION=22.0.2
+ENV NVM_VERSION=0.40.3
+ENV NODE_VERSION=24.9.0
+ENV PYTHON_VERSION=3.12.12
+
+ENV NVM_DIR="/root/.nvm"
+ENV PYENV_ROOT="/opt/pyenv"
+ENV JEXTRACT_PATH="/opt/jextract"
+ENV JAVA_LS_PATH="/opt/java-language-server"
+ENV JDTLS_PATH="/opt/jdtls"
+ENV MAVEN_PATH="/opt/maven"
+ENV JAVA_HOME="/opt/jdk"
+
+ENV PATH="${NVM_DIR}/versions/node/v${NODE_VERSION}/bin/:${PATH}" 
+ENV PATH="${PYENV_ROOT}/bin:${PYENV_ROOT}/shims:${PATH}"
+ENV PATH="${JEXTRACT_PATH}/bin:${PATH}"
+ENV PATH="${JAVA_LS_PATH}/:${PATH}"
+ENV PATH="${JDTLS_PATH}/bin:${PATH}"
+ENV PATH="${MAVEN_PATH}/bin:${PATH}"
+ENV PATH="${JAVA_HOME}/bin:${PATH}"
 
 ENV PYTHONDONTWRITEBYTECODE=1
 ENV PYTHONUNBUFFERED=1
-ENV PYENV_ROOT="/opt/pyenv"
-
-ENV PATH="${PYENV_ROOT}/bin:${PYENV_ROOT}/shims:${PATH}"
-
 
 # 2. Set the working directory inside the container
 WORKDIR /app
@@ -22,73 +37,67 @@ WORKDIR /app
 COPY requirements.txt .
 COPY package.json .
 COPY src/* .
+COPY Docker/scripts/run.sh .
+COPY Docker/opt/ /opt/
 
 # 4. A: Install dependencies
 # RUN apt update
-# RUN apt install -y pkg-config curl clang gopls git libgirepository1.0-dev libssl-dev libcairo2-dev
-
-RUN apk update
-RUN apk add --no-cache \
-    nodejs \
-    npm \
-    bash \
-    bash-completion \
+# RUN apt install
+RUN apt-get update
+RUN apt-get install \
+    --no-install-recommends \
+    --no-install-suggests \
+    -y \
+    pkg-config \
+    ca-certificates \
+    libreadline-dev \
+    liblzma-dev \
+    libsqlite3-dev \
+    libncurses5-dev \
+    libncursesw5-dev \
+    libgirepository1.0-dev \
+    libssl-dev libcairo2-dev \
     curl \
     clang \
-    pkgconf \
-    make \
-    git \
     gopls \
-    linux-headers \
-    build-base \
-    openssh \
-    tzdata \
-    openssl-dev \
-    bzip2-dev \
-    zlib-dev \
-    xz-dev \
-    sqlite-dev \
-    readline-dev \
-    libffi-dev \
-    gdbm-dev \
-    gobject-introspection-dev \
-    cairo-dev
+    git
+
+# RUN apk update
+# RUN apk add --no-cache \
+#     nodejs \
+#     npm \
+#     bash \
+#     bash-completion \
+#     curl \
+#     clang \
+#     pkgconf \
+#     make \
+#     git \
+#     gopls \
+#     gobject-introspection-dev \
+#     cairo-dev
 
 RUN curl -fsSL https://pyenv.run | bash
 RUN pyenv install ${PYTHON_VERSION} && pyenv global ${PYTHON_VERSION} && pyenv local ${PYTHON_VERSION}
 RUN pip install --no-cache-dir -r requirements.txt
 
-# 4. B: Install nvm and node
-# RUN curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.40.3/install.sh | bash
-# RUN . "$NVM_DIR/nvm.sh" && nvm install ${NODE_VERSION}
-# RUN . "$NVM_DIR/nvm.sh" && nvm use v${NODE_VERSION}
-# RUN . "$NVM_DIR/nvm.sh" && nvm alias default v${NODE_VERSION}
+# # 4. B: Install nvm and node
+RUN curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v"${NVM_VERSION}"/install.sh | bash
+RUN . "${NVM_DIR}/nvm.sh" && nvm install ${NODE_VERSION}
+RUN . "${NVM_DIR}/nvm.sh" && nvm use v${NODE_VERSION}
+RUN . "${NVM_DIR}/nvm.sh" && nvm alias default v${NODE_VERSION}
+
+RUN npm install
 
 RUN node --version
 RUN npm --version
-RUN npm install
-
-# 5. A: Remove dependencies
-RUN apk del \
-    linux-headers \
-    build-base \
-    openssh \
-    tzdata \
-    openssl-dev \
-    bzip2-dev \
-    zlib-dev \
-    xz-dev \
-    sqlite-dev \
-    readline-dev \
-    libffi-dev \
-    gdbm-dev \
-    gobject-introspection-dev \
-    cairo-dev
+RUN java --version
 
+# # 5. Cleanup
 RUN rm -rf /tmp/*
-RUN rm -rf /opt/nvm/.cache
+RUN rm -rf "${NVM_DIR}/.cache"
 RUN rm /app/requirements.txt
 
 # 6. Expose Port and define the command used to run the app
 EXPOSE 9999
-CMD ["npm", "run", "start-verbose"]
+CMD ["/app/run.sh"]